Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs11808696 | chr1:227563680 | C/T | 6.96E-5 | 176 | 15.4 | 16.45 | 3.9 | KM Plot |
| PAAD | rs11808843 | chr1:227535418 | A/T | 1.03E-5 | 175 | 15.55 | 15.65 | 3.9 | KM Plot |
| PAAD | rs11809113 | chr1:227374357 | C/T | 3.69E-5 | 177 | 15.53 | 15.43 | 3.9 | KM Plot |
| PAAD | rs11809905 | chr1:227522241 | A/G | 7.01E-6 | 176 | 15.47 | 15.87 | 3.9 | KM Plot |
| PAAD | rs11810440 | chr1:227267402 | T/A | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs11811176 | chr1:227273980 | T/C | 3.2E-5 | 178 | 15.53 | 15.65 | 3.9 | KM Plot |
| PAAD | rs11811210 | chr1:227384286 | C/T | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs11811620 | chr1:227510014 | C/T | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs11811982 | chr1:227581520 | C/A | 6.67E-5 | 177 | 15.37 | 16.45 | 3.9 | KM Plot |
| PAAD | rs11812048 | chr1:227511074 | C/T | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs11828865 | chr11:125588794 | A/G | 0.000108 | 178 | 16.08 | 14.37 | 5.03 | KM Plot |
| PAAD | rs11836819 | chr12:53276395 | A/G | 0 | 176 | 15.62 | 13.47 | 1.03 | KM Plot |
| PAAD | rs1191293 | chr3:120918532 | T/G | 1.3E-8 | 178 | 15.57 | 13.47 | 3.17 | KM Plot |
| PAAD | rs11917188 | chr3:170088607 | C/T | 7.35E-5 | 177 | 7.9 | 15.27 | 15.77 | KM Plot |
| PAAD | rs11924474 | chr3:170091333 | T/G | 0.000151 | 178 | 7.67 | 15.13 | 15.97 | KM Plot |